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Samson On 10/10/13 12:14 PM, Matthew Horridge wrote: Can you increase it some more? One thing, are you sure that tomcat is picking up the settings? Any suggestions? > > Jane Eisenstein > > > > On May 10, 2007, at 6:04 AM, Gerhard Austaller wrote: > >> Hi >> >> >> File -> Properties -> Property Set a 512M value in the 'Memory limit' field (or in the php.ini file). 3. http://caribtechsxm.com/how-to/protege-out-memory-error.php

Boosting the heap size parameter will allow you to read in larger file-based projects. For example, to start with a 500MB heap size, use -Xmx500M. There are two help pages on the wiki about this (I will have to investigate why there are two rather than one) [1,2]. thanka a lot, Regards, h-m-s Ahhh...imagining that irresistible "new car" smell? http://protegewiki.stanford.edu/wiki/Setting_Heap_Size

How To Increase Java Heap Size In Windows

Protege is just a GUI to interact with your ontology, it doesn't usually cause error problems out of memory errors. Somewhere in the file there is a property that looks like this: # LAX.NL.JAVA.OPTION.JAVA.HEAP.SIZE.MAX# -------------------------------------# maximum heap sizelax.nl.java.option.java.heap.size.max=8000000003- Set the number to whatever you want. Autos. _______________________________________________ protege-owl mailing list [hidden email] https://mailman.stanford.edu/mailman/listinfo/protege-owlInstructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03 Gerhard Austaller Reply | Threaded Open this post in threaded view ♦ ♦ | Report Content as Inappropriate ♦

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  • lax.nl.java.option.java.heap.size.initialXms256mlax.nl.java.option.java.heap.size.max Xmx512m _______________________________________________ protege-owl mailing list [hidden email] https://mailman.stanford.edu/mailman/listinfo/protege-owlInstructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03 Matthew Horridge-2 Reply | Threaded Open this post in threaded view ♦ ♦ | Report Content as Inappropriate
  • Free forum by Nabble Edit this page Protege Project › Protege Developer Search everywhere only in this topic Advanced Search OutOfMemory java heap space error with Protege 5 Classic List Threaded
  • We intend to update this to version 4.0.0 at some point in the near future, at which point you’ll be able to load this dataset.
  • Is it fixed in protege 4?I define transitivity by selecting "transitivity check button" when I create a property, but It doesn't give me the transitive individuals.
  • You may change the heap size by editing the run script in a text editor, and change the value of the -Xmx argument.
  • WARNING: LINE: 482092 Expected white space at pos: 6 LINE: "47555"^^.
  • Thanks, Matthew On 12 Sep 2013, at 23:09, EddyVanderlinden <[hidden email]> wrote: Thanks Matthew, I'll follow your advice.
  • I thereafter managed to login to admin and disabled cron before I renamed the file back to original again.
  • This is the right way to modify the memory settings for Protege on an OS x machine (assuming that you start Protege by double clicking the Protege icon).

Regards. What I dont understand is why this is a problem on these two sites all the time I am only trying to view the site in the frontend. This can be specified with the CATALINA_OPTS environment variable. This can be specified with the CATALINA_OPTS environment variable.

Error logged java.lang.OutOfMemoryError: Java heap space at java.lang.reflect.Array.newArray(Native Method) at java.lang.reflect.Array.newInstance(Unknown Source) at java.util.Arrays.copyOf(Unknown Source) How To Check Java Heap Size In Linux I know less about this but this would probably mean that increasing the heap size will only mean that it takes longer to run out of memory. -Timothy [1] http://protegewiki.stanford.edu/wiki/Setting_Heap_Size [2] If you set it too high then your system will hang or you will suffer poor performance because parts of the jvm will be swapped in and out of memory. http://protege-project.136.n4.nabble.com/How-to-increase-Java-heap-size-for-Protege-Editor-td6229.html and use the inference engine (Jess).

You should not have problems. Quitting and restarting made no difference. > > I couldn't find a Protege.lax file on my disk. Protege 4 is much more efficient memory-wise. I need to know how to configure the Protégé Editor to claim more memory.

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I usually set mine to 800M because my system only has 1G of RAM.   thanka a lot, Regards, h-m-s Ahhh...imagining that irresistible "new car" smell?Check out new cars at Yahoo! I tried modifying > the Protege.app's Info.plist properties as follows: > VMOptions > > -Xms64M > -Xmx512M > > > However, Protege still runs extremely slowly. How To Increase Java Heap Size In Windows I usually set mine to 800M because my system only has 1G of RAM. However, I always experience problems with not able to load my ontology due to memory problems.

Autos. _______________________________________________protege-owl mailing list[hidden email]https://mailman.stanford.edu/mailman/listinfo/protege-owlInstructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03 _______________________________________________protege-owl mailing list[hidden email]https://mailman.stanford.edu/mailman/listinfo/protege-owlInstructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03  _______________________________________________ protege-owl mailing list [hidden email] https://mailman.stanford.edu/mailman/listinfo/protege-owlInstructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03 Timothy Redmond Reply | Threaded Open My AccountSearchMapsYouTubePlayNewsGmailDriveCalendarGoogle+TranslatePhotosMoreShoppingWalletFinanceDocsBooksBloggerContactsHangoutsEven more from GoogleSign inHidden fieldsSearch for groups or messages To use Google Groups Discussions, please enable JavaScript in your browser settings, and then refresh this page. . I have seen some places where they say that this error msg might be misleading. Also what does the Activity Monitor show?

Thanks in advance. is there any way I could be wrong? This was set at 128M, and just to test this I upped the Master Value to 512M without any change. Source Thanks for any help.

There are various ways to set this up and you need to choose a way that is appropriate for your installation - please take a look at the tomcat documentation for java:1508) at org.obolibrary.oboformat.parser.OBOFormatParser.parseWs(OBOFormatPars er.java:1372) at org.obolibrary.oboformat.parser.OBOFormatParser.getParseTag(OBOFormat Parser.java:885) at org.obolibrary.oboformat.parser.OBOFormatParser.parseHeaderClause(OBO FormatParser.java:509) Uncaught Exception in thread AWT-EventQueue-0 java.lang.OutOfMemoryError: Java heap space at java.util.concurrent.ConcurrentHashMap.putVal(Unknown Source) at java.util.concurrent.ConcurrentHashMap.put(Unknown Source) at sun.util.resources.ParallelListResourceBundle.loadLookupTablesIfNeces sary(Unknown Source) at sun.util.resources.ParallelListResourceBundle.handleKeySet(Unknown Hi, I am a newbie with regards to ontology.

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Please Log in or Create an account to join the conversation. Reg. On windows it is usually located at: = C:\Program Files\Protege\Protege.lax. 2- Open this file for edit. How can I have a transitive property in protege 3.x?

I know less about this but this would probably mean that increasing the heap size will only mean that it takes longer to run out of memory. -Timothy [1] http://protegewiki.stanford.edu/wiki/Setting_Heap_Size [2] Forgot your username? Find this file. Timothy Redmond Reply | Threaded Open this post in threaded view ♦ ♦ | Report Content as Inappropriate ♦ ♦ Re: OutOfMemory java heap space error with Protege 5 In

Can you share your ontology with us? Maybe I'm starting Protégé incorrectly or need a different switch?